MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-335

Family name MIR-335 (all species)
Seed CAAGAGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-335
Paralogues
Orthologues Bta-Mir-335  Cja-Mir-335  Cpo-Mir-335  Dno-Mir-335  Eca-Mir-335  Ete-Mir-335  Hsa-Mir-335  Laf-Mir-335  Mml-Mir-335  Mmr-Mir-335  Mmu-Mir-335  Ocu-Mir-335  Pab-Mir-335  Rno-Mir-335 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr14: 6444861-6444918 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUUGGGAAAGAUGUCUUUUGGGCGGGGGUCAAGAGCAAUAACGAAAAAUGUUUGUCAUAAACCGUUUUUCAUUAUUGCUCCUGACCUCCUCUCAUUUGCUAUACUCAACUAAGUAA
Get precursor sequence
Structure
        10        20          30        40        50        
AGAUUGGGAAAGAUGUCUUU--|   C        A         C        UUUGU 
                      UGGG GGGGGUCA GAGCAAUAA GAAAAAUG     C
                      ACUC CCUCCAGU CUCGUUAUU CUUUUUGC     A
AAUGAAUCAACUCAUAUCGUUU^   U        C         A        CAAAU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-335_5p
mirBase accessionMIMAT0006624
Sequence 
0- UCAAGAGCAAUAACGAAAAAUGU -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-335
miRDB: MIMAT0006624
Star sequence

Cfa-Mir-335_3p*
mirBase accessionNone
Sequence 
35- GUUUUUCAUUAUUGCUCCUGACC -58
Get sequence