| MirGeneDB ID | Laf-Mir-335 |
|---|---|
| Family name | MIR-335 (all species) |
| Seed | CAAGAGC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-335 Cfa-Mir-335 Cja-Mir-335 Cpo-Mir-335 Dno-Mir-335 Eca-Mir-335 Ete-Mir-335 Hsa-Mir-335 Mml-Mir-335 Mmr-Mir-335 Mmu-Mir-335 Ocu-Mir-335 Pab-Mir-335 Rno-Mir-335 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010032.1: 99864025-99864082 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGACUGGAAAAGACUUCUUUUGGGCGGGGGUCAAGAGCAAUAACGGAGAAUGUCUGUGAUGAACCAUUUUUCAUUAUUGCUCCUGACCUCCUCUCAUUUGCUCCCCGCGGCUGCGUGAGet precursor sequence |
| Structure | 10 20 30 40 50 GGACUGGAAAAGACUUCUUU--| C A C UCUGU UGGG GGGGGUCA GAGCAAUAA GGAGAAUG G ACUC CCUCCAGU CUCGUUAUU CUUUUUAC A AGUGCGUCGGCGCCCCUCGUUU^ U C A CAAGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-335_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCAAGAGCAAUAACGGAGAAUG -22
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|
| Star sequence | Laf-Mir-335_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- UUUUUCAUUAUUGCUCCUGACC -58
Get sequence
|
