MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-335

Family name MIR-335 (all species)
Seed CAAGAGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-335  Cfa-Mir-335  Cpo-Mir-335  Dno-Mir-335  Eca-Mir-335  Ete-Mir-335  Hsa-Mir-335  Laf-Mir-335  Mml-Mir-335  Mmr-Mir-335  Mmu-Mir-335  Ocu-Mir-335  Pab-Mir-335  Rno-Mir-335 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021922.1: 114006196-114006253 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACUGAAAAUGAUGUCUUUUGAGCGGGGGUCAAGAGCAAUAACGAAAAAUGUUUGUCAUAAACCGUUUUUCAUUAUUGCUCCUGACCUCCUCUCAUUUGCUGUAUUCAAUUAGAUAA
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Structure
        10        20          30        40        50        
AGACUGAAAAUGAUGUCUUU--|   C        A         C        UUUGU 
                      UGAG GGGGGUCA GAGCAAUAA GAAAAAUG     C
                      ACUC CCUCCAGU CUCGUUAUU CUUUUUGC     A
AAUAGAUUAACUUAUGUCGUUU^   U        C         A        CAAAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Cja-Mir-335_5p
mirBase accessionNone
Sequence 
0- UCAAGAGCAAUAACGAAAAAUG -22
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Star sequence

Cja-Mir-335_3p* (predicted)
mirBase accessionNone
Sequence 
36- UUUUUCAUUAUUGCUCCUGACC -58
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