MirGeneDB ID | Pab-Mir-335 |
---|---|
Family name | MIR-335 (all species) |
Seed | CAAGAGC |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-335 Cfa-Mir-335 Cja-Mir-335 Cpo-Mir-335 Dno-Mir-335 Eca-Mir-335 Ete-Mir-335 Hsa-Mir-335 Laf-Mir-335 Mml-Mir-335 Mmr-Mir-335 Mmu-Mir-335 Ocu-Mir-335 Rno-Mir-335 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 127789347-127789404 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGAUUGGAAAUGAUUUAUUUUGAGCGGGGGUCAAGAGCAAUAACGAAAAAUGUUUGUCAUAAACCGUUUUUCAUUAUUGCUCCUGACCUCCUCUCAUUUGCUAUAUUCAAUUAAGUAAGet precursor sequence |
Structure | 10 20 30 40 50 AGAUUGGAAAUGAUUUAUUU--| C A C UUUGU UGAG GGGGGUCA GAGCAAUAA GAAAAAUG C ACUC CCUCCAGU CUCGUUAUU CUUUUUGC A AAUGAAUUAACUUAUAUCGUUU^ U C A CAAAU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Pab-Mir-335_5p |
mirBase accession | None |
Sequence |
0- UCAAGAGCAAUAACGAAAAAUG -22
Get sequence
|
Star sequence | Pab-Mir-335_3p* (predicted) |
mirBase accession | None |
Sequence |
36- UUUUUCAUUAUUGCUCCUGACC -58
Get sequence
|