| MirGeneDB ID | Eca-Mir-335 |
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| Family name |
MIR-335 (all species) |
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| Seed |
CAAGAGC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-335
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| Paralogues |
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| Orthologues |
Bta-Mir-335
Cfa-Mir-335
Cja-Mir-335
Cpo-Mir-335
Dno-Mir-335
Ete-Mir-335
Hsa-Mir-335
Laf-Mir-335
Mml-Mir-335
Mmr-Mir-335
Mmu-Mir-335
Ocu-Mir-335
Pab-Mir-335
Rno-Mir-335
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009151.1: 85156076-85156133 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAUUGGGAAAGAUUUCUUUUGAGCGGGGGUCAAGAGCAAUAACGAAAAAUGUUUGUCAUAAACCGUUUUUCAUUAUUGCUCCUGACCUCCUCUCAUUUGCUAUAUCCAAUUAAGUAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGAUUGGGAAAGAUUUCUUU--| C A C UUUGU
UGAG GGGGGUCA GAGCAAUAA GAAAAAUG C
ACUC CCUCCAGU CUCGUUAUU CUUUUUGC A
AAUGAAUUAACCUAUAUCGUUU^ U C A CAAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-335_5p |
| mirBase accession | MIMAT0012942 |
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| Sequence |
0- UCAAGAGCAAUAACGAAAAAUG -22
Get sequence
|
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| Star sequence |
Eca-Mir-335_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UUUUUCAUUAUUGCUCCUGACC -58
Get sequence
|
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