MirGeneDB 3.0

MirGeneDB ID

Cfa-Mir-652

Family name MIR-652 (all species)
Seed AUGGCGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-652
Paralogues
Orthologues Bta-Mir-652  Cja-Mir-652  Cpo-Mir-652  Dno-Mir-652  Eca-Mir-652  Ete-Mir-652  Hsa-Mir-652  Laf-Mir-652  Mml-Mir-652  Mmr-Mir-652  Mmu-Mir-652  Ocu-Mir-652  Pab-Mir-652  Rno-Mir-652 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chrX: 83271857-83271918 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGGCUGCCACGAAUGGCUUUGCACUACACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGCAGUGCACAACCUACACAACUGUACUCGGC
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Structure
        10         20        30        40        50        60   
GCAGGGCUGCCACGAAU-| CUU      A           GAGAG           CAUAGA 
                  GG   UGCACU CACAACCCUAG     GGUGCCAUUCA      \
                  CC   ACGUGA GUGUUGGGAUC     CCGCGGUAAGU      C
CGGCUCAUGUCAACACAU^ AAC      C           A----           UAAUAU 
120       110       100        90            80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-652_5p*

mirBase accessionNone
Sequence
0- ACAACCCUAGGAGAGGGUGCCAUUCA -26
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Mature sequence

Cfa-Mir-652_3p

mirBase accessionMIMAT0006743
Sequence
41- AAUGGCGCCACUAGGGUUGUG -62
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Proposed targets TargetScanVert: cfa-miR-652
miRDB: MIMAT0006743