| MirGeneDB ID | Cpo-Mir-652 |
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| Family name |
MIR-652 (all species) |
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| Seed |
AUGGCGC |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-652
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| Paralogues |
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| Orthologues |
Bta-Mir-652
Cfa-Mir-652
Cja-Mir-652
Dno-Mir-652
Eca-Mir-652
Ete-Mir-652
Hsa-Mir-652
Laf-Mir-652
Mml-Mir-652
Mmr-Mir-652
Mmu-Mir-652
Ocu-Mir-652
Pab-Mir-652
Rno-Mir-652
|
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(cavPor3) |
scaffold_46: 10888951-10889012 [-]
UCSC
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Precursor
(pre-Mir +30nt flank) |
ACAUGGGCACCACGAAUGGCUAUGCACUGCACAACCCUAGGAAGGGGUGCCAUUCACAUGGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGAAGUGUACAACCUACACAACUGUACUCGUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACAUGGGCACCACGAAU-| CUA G GAAGG CAUGGA
GG UGCACU CACAACCCUAG GGUGCCAUUCA \
CC AUGUGA GUGUUGGGAUC CCGCGGUAAGU C
CUGCUCAUGUCAACACAU^ AAC A A---- UAAUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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| Star sequence |
Cpo-Mir-652_5p* (predicted) |
| mirBase accession | MIMAT0047355 |
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| Sequence |
0- ACAACCCUAGGAAGGGGUGCCAUUCA -26
Get sequence
|
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| Mature sequence |
Cpo-Mir-652_3p |
| mirBase accession | MIMAT0047356 |
|---|
| Sequence |
41- AAUGGCGCCACUAGGGUUGUG -62
Get sequence
|
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