| MirGeneDB ID | Pab-Mir-652 |
|---|---|
| Family name | MIR-652 (all species) |
| Seed | AUGGCGC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-652 Cfa-Mir-652 Cja-Mir-652 Cpo-Mir-652 Dno-Mir-652 Eca-Mir-652 Ete-Mir-652 Hsa-Mir-652 Laf-Mir-652 Mml-Mir-652 Mmr-Mir-652 Mmu-Mir-652 Ocu-Mir-652 Rno-Mir-652 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 115895775-115895836 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCAGGGCCGCCACGCAUGGCUAUGCACUGCACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGCAGUGCACAACCUACACAACUGUACUCGGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCAGGGCCGCCACGCAU-| CUA GAGAG CACAUAGA GG UGCACUGCACAACCCUAG GGUGCCAUU \ CC ACGUGACGUGUUGGGAUC CCGCGGUAA C CGGCUCAUGUCAACACAU^ AAC A---- GUUAAUAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Pab-Mir-652_5p* |
| mirBase accession | None |
| Sequence |
0- ACAACCCUAGGAGAGGGUGCCAUU -24
Get sequence
|
| Mature sequence | Pab-Mir-652_3p |
| mirBase accession | None |
| Sequence |
41- AAUGGCGCCACUAGGGUUGUG -62
Get sequence
|
