| MirGeneDB ID | Cja-Mir-652 |
|---|---|
| Family name | MIR-652 (all species) |
| Seed | AUGGCGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-652 Cfa-Mir-652 Cpo-Mir-652 Dno-Mir-652 Eca-Mir-652 Ete-Mir-652 Hsa-Mir-652 Laf-Mir-652 Mml-Mir-652 Mmr-Mir-652 Mmu-Mir-652 Ocu-Mir-652 Pab-Mir-652 Rno-Mir-652 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 102562392-102562452 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGGGCCACCACGAAUGGCUAUGCACUGCACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGCAGUGCACAACCUACACAACUGUACUCGGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGGGCCACCACGAAUGGCUA--| GAGAG CAUAGA UGCACUGCACAACCCUAG GGUGCCAUUCA \ ACGUGACGUGUUGGGAUC CCGCGGUAAGU C UGGCUCAUGUCAACACAUCCAAC^ A---- UAAUAU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-652_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CAACCCUAGGAGAGGGUGCCAUUCA -25
Get sequence
|
| Mature sequence | Cja-Mir-652_3p |
| mirBase accession | None |
| Sequence |
40- AAUGGCGCCACUAGGGUUGUG -61
Get sequence
|
