MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-652

Family name MIR-652 (all species)
Seed AUGGCGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-652  Cfa-Mir-652  Cpo-Mir-652  Dno-Mir-652  Eca-Mir-652  Ete-Mir-652  Hsa-Mir-652  Laf-Mir-652  Mml-Mir-652  Mmr-Mir-652  Mmu-Mir-652  Ocu-Mir-652  Pab-Mir-652  Rno-Mir-652 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021937.1: 102562392-102562452 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGGCCACCACGAAUGGCUAUGCACUGCACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGCAGUGCACAACCUACACAACUGUACUCGGU
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Structure
        10        20          30        40        50        60  
CAGGGCCACCACGAAUGGCUA--|                 GAGAG           CAUAGA 
                       UGCACUGCACAACCCUAG     GGUGCCAUUCA      \
                       ACGUGACGUGUUGGGAUC     CCGCGGUAAGU      C
UGGCUCAUGUCAACACAUCCAAC^                 A----           UAAUAU 
 .       110       100        90        80            70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-652_5p* (predicted)

mirBase accessionNone
Sequence
0- CAACCCUAGGAGAGGGUGCCAUUCA -25
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Mature sequence

Cja-Mir-652_3p

mirBase accessionNone
Sequence
40- AAUGGCGCCACUAGGGUUGUG -61
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