| MirGeneDB ID | Cja-Mir-188-P2 |
|---|---|
| Family name | MIR-188 (all species) |
| Seed | AUCCCUU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-188-P1 Cja-Mir-188-P3 |
| Orthologues | Bta-Mir-188-P2 Cfa-Mir-188-P2 Cpo-Mir-188-P2 Dno-Mir-188-P2 Eca-Mir-188-P2 Hsa-Mir-188-P2 Laf-Mir-188-P2 Mml-Mir-188-P2 Mmr-Mir-188-P2 Mmu-Mir-188-P2 Ocu-Mir-188-P2 Pab-Mir-188-P2 Rno-Mir-188-P2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 48745060-48745119 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAGUGAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCCUUGCUCUCGet precursor sequence |
| Structure | 10 20 30 40 50 AGAGUGAGCCCUUCCCU-- -| UC CA UC GU UGAGCUU GCUC CC UCU CA CCUUGCAUG GGAGGG U CGAG GG AGG GU GGGACGUAC CCUCCC C CUCUCGUUCCUUUCGACUU U^ U- AC UU AC CAAAAGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Cja-Mir-188-P2_5p |
| mirBase accession | None |
| Sequence |
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
|
| Star sequence | Cja-Mir-188-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CCUCCCACAUGCAGGGUUUGCA -60
Get sequence
|
