Mir-188-P2

MirGeneDB ID

Eca-Mir-188-P2

Family name

MIR-188 (all species)

Seed

AUCCCUU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-188

Paralogues

Eca-Mir-188-P1 Eca-Mir-188-P3

Orthologues

Bta-Mir-188-P2 Cfa-Mir-188-P2 Cja-Mir-188-P2 Cpo-Mir-188-P2 Dno-Mir-188-P2 Hsa-Mir-188-P2 Laf-Mir-188-P2 Mml-Mir-188-P2 Mmr-Mir-188-P2 Mmu-Mir-188-P2 Ocu-Mir-188-P2 Pab-Mir-188-P2 Rno-Mir-188-P2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41473769-41473828 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P2)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAGUGAGCCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCAGCUUUCCUUGCUCUC

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Structure

        10          20         30        40        50         
AGAGUGAGCCUUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       C
CUCUCGUUCCUUUCGACUC    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60

Deep sequencing

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Comment

The 3' end of the 5p arm is monouridylated.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-188-P2_5p

mirBase accession

MIMAT0013198

Sequence

0- CAUCCCUUGCAUGGUGGAGGG -21

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Star sequence

Eca-Mir-188-P2_3p*

mirBase accession

MIMAT0013199

Sequence

39- CUCCCACAUGCAGGGUUUGCA -60

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