MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-188-P2

Family name MIR-188 (all species)
Seed AUCCCUU
Species Horse (Equus caballus)
MiRBase ID eca-mir-188
Paralogues Eca-Mir-188-P1  Eca-Mir-188-P3 
Orthologues Bta-Mir-188-P2  Cfa-Mir-188-P2  Cja-Mir-188-P2  Cpo-Mir-188-P2  Dno-Mir-188-P2  Hsa-Mir-188-P2  Laf-Mir-188-P2  Mml-Mir-188-P2  Mmr-Mir-188-P2  Mmu-Mir-188-P2  Ocu-Mir-188-P2  Pab-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P2)		 Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGUGAGCCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCAGCUUUCCUUGCUCUC
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Structure
        10          20         30        40        50         
AGAGUGAGCCUUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       C
CUCUCGUUCCUUUCGACUC    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60
Deep sequencing
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CommentThe 3' end of the 5p arm is monouridylated.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-188-P2_5p
mirBase accessionMIMAT0013198
Sequence 
0- CAUCCCUUGCAUGGUGGAGGG -21
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Star sequence

Eca-Mir-188-P2_3p*
mirBase accessionMIMAT0013199
Sequence 
39- CUCCCACAUGCAGGGUUUGCA -60
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