Mir-362-P5

MirGeneDB ID

Eca-Mir-362-P5

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-501

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Eca-Mir-362-P3b-v1 Eca-Mir-362-P3b-v2 Eca-Mir-362-P4 Eca-Mir-362-P6

Orthologues

Cja-Mir-362-P5 Cpo-Mir-362-P5 Hsa-Mir-362-P5 Mml-Mir-362-P5 Mmr-Mir-362-P5 Mmu-Mir-362-P5 Ocu-Mir-362-P5 Pab-Mir-362-P5 Rno-Mir-362-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41479494-41479552 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P5)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCGAGUUUUCUAUUCUGCUCUCCCUCUCUCAUCCUUCGUCCCUGGGUGAGAGUGCUUUCCGAAUGCAAUGCACCUGGGCAAGGAUUCCAGAGGGCGAGGCUCCUCUGCGUGGAGAAGG

Get precursor sequence

Structure

        10          20        30        40        50        60 
CCCGAGUUUUCUAUUCUG--|  U      CUC      C    CU     AGAG   UUUC 
                    CUC CCCUCU   AUCCUU GUCC  GGGUG    UGC    \
                    GAG GGGAGA   UAGGAA CGGG  UCCAC    ACG    C
GGAAGAGGUGCGUCUCCUCG^  C      CCU      -    --     GUA-   UAAG 
       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-362-P5_5p*

mirBase accession

MIMAT0013224

Sequence

0- CAUCCUUCGUCCCUGGGUGAGAGUGC -26

Get sequence

Mature sequence

Eca-Mir-362-P5_3p

mirBase accession

None

Sequence

37- AAUGCACCUGGGCAAGGAUUCC -59

Get sequence