MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-362-P5

Family name MIR-362 (all species)
Seed AUGCACC
Species Horse (Equus caballus)
MiRBase ID eca-mir-501
Paralogues Eca-Mir-362-P3a-v1  Eca-Mir-362-P3a-v2  Eca-Mir-362-P3b-v1  Eca-Mir-362-P3b-v2  Eca-Mir-362-P4  Eca-Mir-362-P6 
Orthologues Cja-Mir-362-P5  Cpo-Mir-362-P5  Hsa-Mir-362-P5  Mml-Mir-362-P5  Mmr-Mir-362-P5  Mmu-Mir-362-P5  Ocu-Mir-362-P5  Pab-Mir-362-P5  Rno-Mir-362-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P5)
Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGAGUUUUCUAUUCUGCUCUCCCUCUCUCAUCCUUCGUCCCUGGGUGAGAGUGCUUUCCGAAUGCAAUGCACCUGGGCAAGGAUUCCAGAGGGCGAGGCUCCUCUGCGUGGAGAAGG
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Structure
        10          20        30        40        50        60 
CCCGAGUUUUCUAUUCUG--|  U      CUC      C    CU     AGAG   UUUC 
                    CUC CCCUCU   AUCCUU GUCC  GGGUG    UGC    \
                    GAG GGGAGA   UAGGAA CGGG  UCCAC    ACG    C
GGAAGAGGUGCGUCUCCUCG^  C      CCU      -    --     GUA-   UAAG 
       110       100        90         80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-362-P5_5p*

mirBase accessionMIMAT0013224
Sequence
0- CAUCCUUCGUCCCUGGGUGAGAGUGC -26
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Mature sequence

Eca-Mir-362-P5_3p

mirBase accessionNone
Sequence
37- AAUGCACCUGGGCAAGGAUUCC -59
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