Mir-362-P5

MirGeneDB ID

Cpo-Mir-362-P5

Family name

MIR-362 (all species)

Seed

AUCCUUU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-501

Paralogues

Cpo-Mir-362-P3b Cpo-Mir-362-P4 Cpo-Mir-362-P6

Orthologues

Cja-Mir-362-P5 Eca-Mir-362-P5 Hsa-Mir-362-P5 Mml-Mir-362-P5 Mmr-Mir-362-P5 Mmu-Mir-362-P5 Ocu-Mir-362-P5 Pab-Mir-362-P5 Rno-Mir-362-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_132: 3009773-3009832 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-362-P5)

Mir-188-P1 scaffold_132: 3003104-3003162 [+] UCSC
Mir-188-P2 scaffold_132: 3003465-3003524 [+] UCSC
Mir-362-P4 scaffold_132: 3009085-3009144 [+] UCSC
Mir-362-P5 scaffold_132: 3009773-3009832 [+] UCSC
Mir-362-P3b scaffold_132: 3010278-3010339 [+] UCSC
Mir-188-P3 scaffold_132: 3012570-3012628 [+] UCSC
Mir-362-P6 scaffold_132: 3014248-3014306 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UCCAGGCCUUUUGCUUUGCUCCUCCUCUCUAAUCCUUUGUCCCUGAGUGAGAAUGCUUUCAGAAUGCAGUGCUCCCAGGCAAGGGUUCUGAGAGGGCGAGCCUCCUCUGCAUGGAGAAGG

Get precursor sequence

Structure

        10          20        30        40        50         
UCCAGGCCUUUUGCUUU--|   C       UAAU        CCU    GAGAAUGCUU 
                   GCUC UCCUCUC    CCUUUGUC   GAGU          U
                   CGAG GGGAGAG    GGGAACGG   CUCG          C
GGAAGAGGUACGUCUCCUC^   C       UCUU        ACC    UGACGUAAGA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-362-P5_5p

mirBase accession

MIMAT0047303

Sequence

0- AAUCCUUUGUCCCUGAGUGAGAAU -24

Get sequence

Star sequence

Cpo-Mir-362-P5_3p* (predicted)

mirBase accession

MIMAT0047304

Sequence

37- AGUGCUCCCAGGCAAGGGUUCUG -60

Get sequence