MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-188-P1

Family name MIR-188 (all species)
Seed AUGCCUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-532
Paralogues Cpo-Mir-188-P2  Cpo-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cja-Mir-188-P1  Dno-Mir-188-P1  Eca-Mir-188-P1  Hsa-Mir-188-P1  Laf-Mir-188-P1  Mml-Mir-188-P1  Mmr-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Pab-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_132: 3003104-3003162 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-188-P1 scaffold_132: 3003104-3003162 [+] UCSC
Mir-188-P2 scaffold_132: 3003465-3003524 [+] UCSC
Mir-362-P4 scaffold_132: 3009085-3009144 [+] UCSC
Mir-362-P5 scaffold_132: 3009773-3009832 [+] UCSC
Mir-362-P3b scaffold_132: 3010278-3010339 [+] UCSC
Mir-188-P3 scaffold_132: 3012570-3012628 [+] UCSC
Mir-362-P6 scaffold_132: 3014248-3014306 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGUGAACCCCCACACUUGCUUUCUCUCUUCCAUGCCUUGAGUGUAGGACCGUUGGCGUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGUGAGCCUUCUCUUCUUCUCCUGUG
Get precursor sequence
Structure
        10          20        30        40        50         
AGUGAACCCCCACACUU--|   U       C  U      A    A   CC  UGGCGU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAG GGGAGGA GU CGGAAC CACA CCU  CA      C
GUGUCCUCUUCUUCUCUUC^   U       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-188-P1_5p
mirBase accessionMIMAT0047335
Sequence 
0- CAUGCCUUGAGUGUAGGACCGU -22
Get sequence
Star sequence

Cpo-Mir-188-P1_3p*
mirBase accessionMIMAT0047336
Sequence 
37- CCUCCCACACCCAAGGCUUGCA -59
Get sequence