Mir-188-P1

MirGeneDB ID

Hsa-Mir-188-P1

Family name

MIR-188 (all species)

Seed

AUGCCUU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-532

Paralogues

Hsa-Mir-188-P2 Hsa-Mir-188-P3

Orthologues

Bta-Mir-188-P1 Cfa-Mir-188-P1 Cja-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Eca-Mir-188-P1 Laf-Mir-188-P1 Mml-Mir-188-P1 Mmr-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Pab-Mir-188-P1 Rno-Mir-188-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 50003167-50003225 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P1)

Mir-188-P1 chrX: 50003167-50003225 [+] UCSC Ensembl
Mir-188-P2 chrX: 50003517-50003576 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P4 chrX: 50008968-50009026 [+] UCSC Ensembl
Mir-362-P5 chrX: 50009735-50009794 [+] UCSC Ensembl
Mir-362-P3b chrX: 50010681-50010742 [+] UCSC Ensembl
Mir-188-P3 chrX: 50013256-50013314 [+] UCSC Ensembl
Mir-362-P6 chrX: 50014612-50014671 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAGACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCCUCUCCAGU

Get precursor sequence

Structure

        10          20        30        40        50         
AGCAGACCUCCCGACUU--|   U    C  C  U      A    A   CC  UGGCAU 
                   GCUU CUCU CU CA GCCUUG GUGU GGA  GU      \
                   CGAG GAGA GA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCCUUCUCUUC^   C    A  C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-188-P1_5p

mirBase accession

MIMAT0002888

Sequence

0- CAUGCCUUGAGUGUAGGACCGU -22

Get sequence

Proposed targets

microrna.org: MIMAT0002888
TargetScanVert: hsa-miR-532-5p
TargetMiner: hsa-miR-532-5p
miRDB: MIMAT0002888

Star sequence

Hsa-Mir-188-P1_3p*

mirBase accession

MIMAT0004780

Sequence

37- CCUCCCACACCCAAGGCUUGCA -59

Get sequence

Proposed targets

microrna.org: MIMAT0004780
TargetScanVert: hsa-miR-532-3p
TargetMiner: hsa-miR-532-3p
miRDB: MIMAT0004780