MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-188-P1

Family name MIR-188 (all species)
Seed AUGCCUU
Species Horse (Equus caballus)
MiRBase ID eca-mir-532
Paralogues Eca-Mir-188-P2  Eca-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cja-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Hsa-Mir-188-P1  Laf-Mir-188-P1  Mml-Mir-188-P1  Mmr-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Pab-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)
Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAAACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCCUCUCCAGU
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Structure
        10          20        30        40        50         
AGCAAACCUUCUGAUUU--|   U       A  U      A    A   CC  UGGCAU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAA GGGAGGA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCUUCCUUUUC^   C       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-188-P1_5p

mirBase accessionMIMAT0013235
Sequence
0- CAUGCCUUGAGUGUAGGACCGU -22
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Star sequence

Eca-Mir-188-P1_3p*

mirBase accessionMIMAT0013236
Sequence
37- CCUCCCACACCCAAGGCUUGCA -59
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