Mir-188-P1

MirGeneDB ID

Eca-Mir-188-P1

Family name

MIR-188 (all species)

Seed

AUGCCUU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-532

Paralogues

Eca-Mir-188-P2 Eca-Mir-188-P3

Orthologues

Bta-Mir-188-P1 Cfa-Mir-188-P1 Cja-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Hsa-Mir-188-P1 Laf-Mir-188-P1 Mml-Mir-188-P1 Mmr-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Pab-Mir-188-P1 Rno-Mir-188-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41473395-41473453 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P1)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAAACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCCUCUCCAGU

Get precursor sequence

Structure

        10          20        30        40        50         
AGCAAACCUUCUGAUUU--|   U       A  U      A    A   CC  UGGCAU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAA GGGAGGA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCUUCCUUUUC^   C       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-188-P1_5p

mirBase accession

MIMAT0013235

Sequence

0- CAUGCCUUGAGUGUAGGACCGU -22

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Star sequence

Eca-Mir-188-P1_3p*

mirBase accession

MIMAT0013236

Sequence

37- CCUCCCACACCCAAGGCUUGCA -59

Get sequence