MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-188-P1

Family name MIR-188 (all species)
Seed AUGCCUU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-532
Paralogues Rno-Mir-188-P2 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cja-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Eca-Mir-188-P1  Hsa-Mir-188-P1  Laf-Mir-188-P1  Mml-Mir-188-P1  Mmr-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Pab-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 16109880-16109938 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-188-P1 chrX: 16109880-16109938 [+] UCSC Ensembl
Mir-188-P2 chrX: 16110280-16110339 [+] UCSC Ensembl
Mir-362-P4 chrX: 16117174-16117232 [+] UCSC Ensembl
Mir-362-P5 chrX: 16117887-16117946 [+] UCSC Ensembl
Mir-362-P6 chrX: 16121342-16121402 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAAGCCUACAGAUUUGCUUUUUCUCUUCCAUGCCUUGAGUGUAGGACUGUUGACAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGAGCAAGCCUUCUCUUCUCUCUCCUGC
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Structure
        10          20        30        40        50         
AGGAAGCCUACAGAUUU--|   U       C  U      A    A   CU  UGACAU 
                   GCUU UUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAA GAGAGGA GU CGGAAC CACA CCU  CA      C
CGUCCUCUCUCUUCUCUUC^   C       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Rno-Mir-188-P1_5p
mirBase accessionMIMAT0005322
Sequence 
0- CAUGCCUUGAGUGUAGGACUGU -22
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Proposed targets microrna.org: MIMAT0005322
TargetScanVert: rno-miR-532-5p
miRDB: MIMAT0005322
Star sequence

Rno-Mir-188-P1_3p*
mirBase accessionMIMAT0005323
Sequence 
37- CCUCCCACACCCAAGGCUUGCA -59
Get sequence
Proposed targets microrna.org: MIMAT0005323
TargetScanVert: rno-miR-532-3p
miRDB: MIMAT0005323