MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-188-P1

Family name MIR-188 (all species)
Seed AUGCCUU
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID mmr-mir-532
Paralogues Mmr-Mir-188-P2  Mmr-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cja-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Eca-Mir-188-P1  Hsa-Mir-188-P1  Laf-Mir-188-P1  Mml-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Pab-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007693.1: 138605615-138605673 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)
Mir-188-P1 CM007693.1: 138605615-138605673 [+] UCSC Ensembl
Mir-188-P2 CM007693.1: 138605984-138606043 [+] UCSC Ensembl
Mir-362-P3a-v1 CM007693.1: 138618071-138618132 [+] UCSC Ensembl
Mir-362-P3a-v2 CM007693.1: 138618071-138618132 [+] UCSC Ensembl
Mir-362-P3b-v1 CM007693.1: 138619927-138619987 [+] UCSC Ensembl
Mir-362-P3b-v2 CM007693.1: 138619927-138619987 [+] UCSC Ensembl
Mir-188-P3 CM007693.1: 138621731-138621789 [+] UCSC Ensembl
Mir-362-P6 CM007693.1: 138623099-138623157 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGAACCUCCGGACUUGCUUUCUCUCUUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGAGUGAGUCUUCUCUUCCCUCUCCAGU
Get precursor sequence
Structure
        10          20        30        40        50         
AGUGAACCUCCGGACUU--|   U       C  U      A    A   CC  UGGCAU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   UGAG GAGAGGA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCCUUCUCUUC^   U       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Mature sequence

Mmr-Mir-188-P1_5p

mirBase accessionMIMAT0049158
Sequence
0- CAUGCCUUGAGUGUAGGACCGU -22
Get sequence
Star sequence

Mmr-Mir-188-P1_3p*

mirBase accessionNone
Sequence
37- CCUCCCACACCCAAGGCUUGCA -59
Get sequence