MirGeneDB ID | Laf-Mir-188-P1 |
Family name |
MIR-188 (all species) |
Seed |
AUCCCUU |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-188-P2
Laf-Mir-188-P3
|
Orthologues |
Bta-Mir-188-P1
Cfa-Mir-188-P1
Cja-Mir-188-P1
Cpo-Mir-188-P1
Dno-Mir-188-P1
Eca-Mir-188-P1
Hsa-Mir-188-P1
Mml-Mir-188-P1
Mmr-Mir-188-P1
Mmu-Mir-188-P1
Ocu-Mir-188-P1
Pab-Mir-188-P1
Rno-Mir-188-P1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010083.1: 353164-353224 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAGUGAGCCUCUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAAACUUUCUGGAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUAAGCUUUCCUUGCUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAGUGAGCCUCUCCCU-- -| UC CA UC GU UGAAACUU
GCUC CC UCU CA CCUUGCAUG GGAGGG \
CGAG GG AGG GU GGGACGUAC CCUCCC U
CUCUCGUUCCUUUCGAAUC U^ U- AC UU AC CAAAGGUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Laf-Mir-188-P1_5p |
mirBase accession | None |
Sequence |
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
|
Star sequence |
Laf-Mir-188-P1_3p* |
mirBase accession | None |
Sequence |
39- CCUCCCACAUGCAGGGUUUGCA -61
Get sequence
|