| MirGeneDB ID | Laf-Mir-188-P1 |
|---|---|
| Family name | MIR-188 (all species) |
| Seed | AUCCCUU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-188-P2 Laf-Mir-188-P3 |
| Orthologues | Bta-Mir-188-P1 Cfa-Mir-188-P1 Cja-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Eca-Mir-188-P1 Hsa-Mir-188-P1 Mml-Mir-188-P1 Mmr-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Pab-Mir-188-P1 Rno-Mir-188-P1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010083.1: 353164-353224 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAGUGAGCCUCUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAAACUUUCUGGAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUAAGCUUUCCUUGCUCUCGet precursor sequence |
| Structure | 10 20 30 40 50 AGAGUGAGCCUCUCCCU-- -| UC CA UC GU UGAAACUU GCUC CC UCU CA CCUUGCAUG GGAGGG \ CGAG GG AGG GU GGGACGUAC CCUCCC U CUCUCGUUCCUUUCGAAUC U^ U- AC UU AC CAAAGGUC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Laf-Mir-188-P1_5p |
| mirBase accession | None |
| Sequence |
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
|
| Star sequence | Laf-Mir-188-P1_3p* |
| mirBase accession | None |
| Sequence |
39- CCUCCCACAUGCAGGGUUUGCA -61
Get sequence
|
