MirGeneDB ID | Laf-Mir-188-P3 |
---|---|
Family name | MIR-188 (all species) |
Seed | ACCCAUU |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-188-P1 Laf-Mir-188-P2 |
Orthologues | Bta-Mir-188-P3 Cfa-Mir-188-P3 Cja-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Eca-Mir-188-P3 Ete-Mir-188-P3 Hsa-Mir-188-P3 Mml-Mir-188-P3 Mmr-Mir-188-P3 Ocu-Mir-188-P3 Pab-Mir-188-P3 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010083.1: 317651-317709 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GUGCAGAAGAACGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAUUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGACGAGCCUUGACGUCGUGAACCUUCGet precursor sequence |
Structure | 10 20 30 40 50 GUGCAGAAGAACGAACU-- C CAUAC-| U C U GAUUU GCUC UUCUCC CCAU GCAUAU GGAG UGU \ CGAG AGGAGG GGUA CGUGUG CCUC ACA C CUUCCAAGUGCUGCAGUUC C ACAUUA^ - U C AAACU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Laf-Mir-188-P3_5p |
mirBase accession | None |
Sequence |
0- UACCCAUUGCAUAUCGGAGUUGU -23
Get sequence
|
Star sequence | Laf-Mir-188-P3_3p* |
mirBase accession | None |
Sequence |
36- ACCUCCUGUGUGCAUGGAUUACA -59
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|