MirGeneDB ID | Laf-Mir-188-P2 |
Family name |
MIR-188 (all species) |
Seed |
AUGCCUU |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-188-P1
Laf-Mir-188-P3
|
Orthologues |
Bta-Mir-188-P2
Cfa-Mir-188-P2
Cja-Mir-188-P2
Cpo-Mir-188-P2
Dno-Mir-188-P2
Eca-Mir-188-P2
Hsa-Mir-188-P2
Mml-Mir-188-P2
Mmr-Mir-188-P2
Mmu-Mir-188-P2
Ocu-Mir-188-P2
Pab-Mir-188-P2
Rno-Mir-188-P2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010083.1: 353531-353589 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUGAAUCUCAUGACUUGUUUUUUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUAUUAAUUAUCCUCCCACACCCAAGGCUUGCAGGAGAGAGAGCCUCCUCUUUCCUCUCCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUGAAUCUCAUGACUU--| A U A A CCGUUGGUAU
GUUUUUUCUCUU CA GCCUUG GUGU GGA \
CGAGAGAGAGGA GU CGGAAC CACA CCU A
UGACCUCUCCUUUCUCCUC^ C U C C CCUAUUAAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Laf-Mir-188-P2_5p |
mirBase accession | None |
Sequence |
0- CAUGCCUUGAGUGUAGGACCGU -22
Get sequence
|
Star sequence |
Laf-Mir-188-P2_3p* |
mirBase accession | None |
Sequence |
37- CCUCCCACACCCAAGGCUUGCA -59
Get sequence
|