MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-188-P2

Family name MIR-188 (all species)
Seed AUCCCUU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-188
Paralogues Ocu-Mir-188-P1  Ocu-Mir-188-P3 
Orthologues Bta-Mir-188-P2  Cfa-Mir-188-P2  Cja-Mir-188-P2  Cpo-Mir-188-P2  Dno-Mir-188-P2  Eca-Mir-188-P2  Hsa-Mir-188-P2  Laf-Mir-188-P2  Mml-Mir-188-P2  Mmr-Mir-188-P2  Mmu-Mir-188-P2  Pab-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrX: 34232654-34232713 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P2)		 Mir-188-P1 chrX: 34232287-34232345 [+] UCSC Ensembl
Mir-188-P2 chrX: 34232654-34232713 [+] UCSC Ensembl
Mir-362-P2 chrX: 34235397-34235456 [+] UCSC Ensembl
Mir-362-P3a chrX: 34237519-34237579 [+] UCSC Ensembl
Mir-362-P4 chrX: 34238027-34238085 [+] UCSC Ensembl
Mir-362-P5 chrX: 34238810-34238869 [+] UCSC Ensembl
Mir-188-P3 chrX: 34242048-34242106 [+] UCSC Ensembl
Mir-362-P6 chrX: 34243943-34244002 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGUGAACCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUAUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCAGCUUUCCUCACGCUC
Get precursor sequence
Structure
        10          20         30        40        50         
AGAGUGAACCUUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       A
CUCGCACUCCUUUCGACUC    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut is consistently +3 across mammals.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-188-P2_5p
mirBase accessionMIMAT0048297
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
Star sequence

Ocu-Mir-188-P2_3p*
mirBase accessionMIMAT0048298
Sequence 
39- CUCCCACAUGCAGGGUUUGCA -60
Get sequence