MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-188-P3

Family name MIR-188 (all species)
Seed ACCCAUU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-660
Paralogues Ocu-Mir-188-P1  Ocu-Mir-188-P2 
Orthologues Bta-Mir-188-P3  Cfa-Mir-188-P3  Cja-Mir-188-P3  Cpo-Mir-188-P3  Dno-Mir-188-P3  Eca-Mir-188-P3  Ete-Mir-188-P3  Hsa-Mir-188-P3  Laf-Mir-188-P3  Mml-Mir-188-P3  Mmr-Mir-188-P3  Pab-Mir-188-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrX: 34242048-34242106 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P3)		 Mir-188-P1 chrX: 34232287-34232345 [+] UCSC Ensembl
Mir-188-P2 chrX: 34232654-34232713 [+] UCSC Ensembl
Mir-362-P2 chrX: 34235397-34235456 [+] UCSC Ensembl
Mir-362-P3a chrX: 34237519-34237579 [+] UCSC Ensembl
Mir-362-P4 chrX: 34238027-34238085 [+] UCSC Ensembl
Mir-362-P5 chrX: 34238810-34238869 [+] UCSC Ensembl
Mir-188-P3 chrX: 34242048-34242106 [+] UCSC Ensembl
Mir-362-P6 chrX: 34243943-34244002 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCAGAAGAAUGAACUGCUCCUUCUCCUGUACCCAUUGCAUAUCGGAGUUGUAAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUGCAGGAGGGUGAGCCUUGUCAUCACGAAGCUUC
Get precursor sequence
Structure
        10          20        30         40        50         
GUGCAGAAGAAUGAACU--    C          C-|   U      C    U   AAAUU 
                   GCUC UUCUCCUGUA  CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGGACGU  GGUA CGUGUG CCUC ACA     C
CUUCGAAGCACUACUGUUC    U          UA^   -      U    C   AAACU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-188-P3_5p
mirBase accessionMIMAT0048551
Sequence 
0- UACCCAUUGCAUAUCGGAGUUGU -23
Get sequence
Star sequence

Ocu-Mir-188-P3_3p*
mirBase accessionMIMAT0048552
Sequence 
36- ACCUCCUGUGUGCAUGGAUUGCA -59
Get sequence