MirGeneDB 3.0

MirGeneDB ID

Hsa-Mir-188-P3

Family name MIR-188 (all species)
Seed ACCCAUU
Species Human (Homo sapiens)
MiRBase ID hsa-mir-660
Paralogues Hsa-Mir-188-P1  Hsa-Mir-188-P2 
Orthologues Bta-Mir-188-P3  Cfa-Mir-188-P3  Cja-Mir-188-P3  Cpo-Mir-188-P3  Dno-Mir-188-P3  Eca-Mir-188-P3  Ete-Mir-188-P3  Laf-Mir-188-P3  Mml-Mir-188-P3  Mmr-Mir-188-P3  Ocu-Mir-188-P3  Pab-Mir-188-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(hg38)
chrX: 50013256-50013314 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P3)
Mir-188-P1 chrX: 50003167-50003225 [+] UCSC Ensembl
Mir-188-P2 chrX: 50003517-50003576 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P4 chrX: 50008968-50009026 [+] UCSC Ensembl
Mir-362-P5 chrX: 50009735-50009794 [+] UCSC Ensembl
Mir-362-P3b chrX: 50010681-50010742 [+] UCSC Ensembl
Mir-188-P3 chrX: 50013256-50013314 [+] UCSC Ensembl
Mir-362-P6 chrX: 50014612-50014671 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCCUUGUCAUCGUGAAUCUUC
Get precursor sequence
Structure
        10          20        30         40        50         
GUGCAGAAGAAUGAACU--    C      CAUAC-|   U      C    U   GAAUU 
                   GCUC UUCUCC      CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGG      GGUA CGUGUG CCUC ACA     C
CUUCUAAGUGCUACUGUUC    U      ACAUUA^   -      U    C   AAACU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Mature sequence

Hsa-Mir-188-P3_5p

mirBase accessionMIMAT0003338
Sequence
0- UACCCAUUGCAUAUCGGAGUUGU -23
Get sequence
Proposed targets microrna.org: MIMAT0003338
TargetScanVert: hsa-miR-660-5p
TargetMiner: hsa-miR-660-5p
miRDB: MIMAT0003338
Star sequence

Hsa-Mir-188-P3_3p*

mirBase accessionMIMAT0022711
Sequence
36- ACCUCCUGUGUGCAUGGAUUACA -59
Get sequence
Proposed targets TargetScanVert: hsa-miR-660-3p
TargetMiner: hsa-miR-660-3p
miRDB: MIMAT0022711