| MirGeneDB ID | Cja-Mir-188-P3 |
|---|---|
| Family name | MIR-188 (all species) |
| Seed | ACCCAUU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-188-P1 Cja-Mir-188-P2 |
| Orthologues | Bta-Mir-188-P3 Cfa-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Eca-Mir-188-P3 Ete-Mir-188-P3 Hsa-Mir-188-P3 Laf-Mir-188-P3 Mml-Mir-188-P3 Mmr-Mir-188-P3 Ocu-Mir-188-P3 Pab-Mir-188-P3 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 48754892-48754950 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCGCUGUCAUCGUGAAUCUUCGet precursor sequence |
| Structure | 10 20 30 40 50 GUGCAGAAGAAUGAACU-- C CAUAC-| U C U GAAUU GCUC UUCUCC CCAU GCAUAU GGAG UGU \ CGAG GGGAGG GGUA CGUGUG CCUC ACA C CUUCUAAGUGCUACUGUCG U ACAUUA^ - U C AAACU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-188-P3_5p |
| mirBase accession | None |
| Sequence |
0- UACCCAUUGCAUAUCGGAGUUGU -23
Get sequence
|
| Star sequence | Cja-Mir-188-P3_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- ACCUCCUGUGUGCAUGGAUUACA -59
Get sequence
|
