MirGeneDB ID | Cja-Mir-188-P3 |
Family name |
MIR-188 (all species) |
Seed |
ACCCAUU |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-188-P1
Cja-Mir-188-P2
|
Orthologues |
Bta-Mir-188-P3
Cfa-Mir-188-P3
Cpo-Mir-188-P3
Dno-Mir-188-P3
Eca-Mir-188-P3
Ete-Mir-188-P3
Hsa-Mir-188-P3
Laf-Mir-188-P3
Mml-Mir-188-P3
Mmr-Mir-188-P3
Ocu-Mir-188-P3
Pab-Mir-188-P3
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 48754892-48754950 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCGCUGUCAUCGUGAAUCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGCAGAAGAAUGAACU-- C CAUAC-| U C U GAAUU
GCUC UUCUCC CCAU GCAUAU GGAG UGU \
CGAG GGGAGG GGUA CGUGUG CCUC ACA C
CUUCUAAGUGCUACUGUCG U ACAUUA^ - U C AAACU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-188-P3_5p |
mirBase accession | None |
Sequence |
0- UACCCAUUGCAUAUCGGAGUUGU -23
Get sequence
|
Star sequence |
Cja-Mir-188-P3_3p* (predicted) |
mirBase accession | None |
Sequence |
36- ACCUCCUGUGUGCAUGGAUUACA -59
Get sequence
|