MirGeneDB ID | Cja-Mir-188-P1 |
Family name |
MIR-188 (all species) |
Seed |
AUGCCUU |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-188-P2
Cja-Mir-188-P3
|
Orthologues |
Bta-Mir-188-P1
Cfa-Mir-188-P1
Cpo-Mir-188-P1
Dno-Mir-188-P1
Eca-Mir-188-P1
Hsa-Mir-188-P1
Laf-Mir-188-P1
Mml-Mir-188-P1
Mmr-Mir-188-P1
Mmu-Mir-188-P1
Ocu-Mir-188-P1
Pab-Mir-188-P1
Rno-Mir-188-P1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 48744712-48744770 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCAAACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCCUCUCCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCAAACCUCCCGACUU--| U C C U A A CC UGGCAU
GCUU CUCU CU CA GCCUUG GUGU GGA GU \
CGAG GAGA GA GU CGGAAC CACA CCU CA C
UGACCUCUCCCUUCUCUUC^ C A C U C C CC UUAAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-188-P1_5p |
mirBase accession | None |
Sequence |
0- CAUGCCUUGAGUGUAGGACCGU -22
Get sequence
|
Star sequence |
Cja-Mir-188-P1_3p* |
mirBase accession | None |
Sequence |
37- CCUCCCACACCCAAGGCUUGCA -59
Get sequence
|