| MirGeneDB ID | Cja-Mir-188-P1 |
|---|---|
| Family name | MIR-188 (all species) |
| Seed | AUGCCUU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-188-P2 Cja-Mir-188-P3 |
| Orthologues | Bta-Mir-188-P1 Cfa-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Eca-Mir-188-P1 Hsa-Mir-188-P1 Laf-Mir-188-P1 Mml-Mir-188-P1 Mmr-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Pab-Mir-188-P1 Rno-Mir-188-P1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 48744712-48744770 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGCAAACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCCUCUCCAGUGet precursor sequence |
| Structure | 10 20 30 40 50 AGCAAACCUCCCGACUU--| U C C U A A CC UGGCAU GCUU CUCU CU CA GCCUUG GUGU GGA GU \ CGAG GAGA GA GU CGGAAC CACA CCU CA C UGACCUCUCCCUUCUCUUC^ C A C U C C CC UUAAUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-188-P1_5p |
| mirBase accession | None |
| Sequence |
0- CAUGCCUUGAGUGUAGGACCGU -22
Get sequence
|
| Star sequence | Cja-Mir-188-P1_3p* |
| mirBase accession | None |
| Sequence |
37- CCUCCCACACCCAAGGCUUGCA -59
Get sequence
|
