Mir-188-P1

MirGeneDB ID

Mml-Mir-188-P1

Family name

MIR-188 (all species)

Seed

AUGCCUU

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-532

Paralogues

Mml-Mir-188-P2 Mml-Mir-188-P3

Orthologues

Bta-Mir-188-P1 Cfa-Mir-188-P1 Cja-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Eca-Mir-188-P1 Hsa-Mir-188-P1 Laf-Mir-188-P1 Mmr-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Pab-Mir-188-P1 Rno-Mir-188-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 49792095-49792153 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P1)

Mir-188-P1 CM014356.1: 49792095-49792153 [+] UCSC Ensembl
Mir-188-P2 CM014356.1: 49792448-49792507 [+] UCSC Ensembl
Mir-362-P3a-v1 CM014356.1: 49797348-49797409 [+] UCSC Ensembl
Mir-362-P3a-v2 CM014356.1: 49797348-49797409 [+] UCSC Ensembl
Mir-362-P4 CM014356.1: 49797871-49797929 [+] UCSC Ensembl
Mir-362-P3b CM014356.1: 49801117-49801177 [+] UCSC Ensembl
Mir-188-P3 CM014356.1: 49803687-49803745 [+] UCSC Ensembl
Mir-362-P6 CM014356.1: 49805039-49805098 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAGACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCAAGCCUUCUCUUCCCUCUCCAGU

Get precursor sequence

Structure

        10          20        30        40        50         
AGCAGACCUCCCGACUU--|   U    C  C  U      A    A   CC  UGGCAU 
                   GCUU CUCU CU CA GCCUUG GUGU GGA  GU      \
                   CGAA GAGA GA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCCUUCUCUUC^   C    A  C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-188-P1_5p

mirBase accession

MIMAT0006403

Sequence

0- CAUGCCUUGAGUGUAGGACCGU -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-532-5p

Star sequence

Mml-Mir-188-P1_3p*

mirBase accession

MIMAT0006404

Sequence

37- CCUCCCACACCCAAGGCUUGCA -59

Get sequence

Proposed targets

TargetScanVert: mml-miR-532-3p