MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-188-P1

Family name MIR-188 (all species)
Seed AUCCCUU
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-188
Paralogues Mml-Mir-188-P2  Mml-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Hsa-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rheMac8_trace)
chrX: 50008592-50008651 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)
Mir-188-P2 chrX: 50008239-50008297 [+] UCSC Ensembl
Mir-188-P1 chrX: 50008592-50008651 [+] UCSC Ensembl
Mir-362-P2-v1 chrX: 50013506-50013567 [+] UCSC Ensembl
Mir-362-P2-v2 chrX: 50013506-50013567 [+] UCSC Ensembl
Mir-362-P1 chrX: 50014029-50014087 [+] UCSC Ensembl
Mir-362-P5 chrX: 50017286-50017346 [+] UCSC Ensembl
Mir-362-P3 chrX: 50018014-50018073 [+] UCSC Ensembl
Mir-188-P3 chrX: 50020582-50020640 [+] UCSC Ensembl
Mir-362-P4 chrX: 50021934-50021993 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGCGAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUAUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCAGCUUUCCUUGCUCUC
Get precursor sequence
Structure
        10          20         30        40        50         
AGAGCGAGCCCUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       A
CUCUCGUUCCUUUCGACUC    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60
Deep sequencing
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CommentThe Dicer cut is consistently +3 across mammals.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-188-P1_5p

mirBase accessionMIMAT0002307
Sequence
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
Proposed targets TargetScanVert: mml-miR-188-5p
Star sequence

Mml-Mir-188-P1_3p*

mirBase accessionMIMAT0026571
Sequence
39- CUCCCACAUGCAGGGUUUGCA -60
Get sequence
Proposed targets TargetScanVert: mml-miR-188-3p