Mir-362-P3a-v1

MirGeneDB ID

Mml-Mir-362-P3a-v1

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-500a

Paralogues

Mml-Mir-362-P3a-v2 Mml-Mir-362-P3b Mml-Mir-362-P4 Mml-Mir-362-P5 Mml-Mir-362-P6

Orthologues

Bta-Mir-362-P3a-v1 Bta-Mir-362-P3a-v2 Bta-Mir-362-P3a-v3 Cfa-Mir-362-P3a-v1 Cfa-Mir-362-P3a-v2 Cja-Mir-362-P3a-v1 Cja-Mir-362-P3a-v2 Dno-Mir-362-P3a-v1 Dno-Mir-362-P3a-v2 Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Hsa-Mir-362-P3a-v1 Hsa-Mir-362-P3a-v2 Mmr-Mir-362-P3a-v1 Mmr-Mir-362-P3a-v2 Ocu-Mir-362-P3a Pab-Mir-362-P3a-v1 Pab-Mir-362-P3a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 49797348-49797409 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3a-v1)

Mir-188-P1 CM014356.1: 49792095-49792153 [+] UCSC Ensembl
Mir-188-P2 CM014356.1: 49792448-49792507 [+] UCSC Ensembl
Mir-362-P3a-v1 CM014356.1: 49797348-49797409 [+] UCSC Ensembl
Mir-362-P3a-v2 CM014356.1: 49797348-49797409 [+] UCSC Ensembl
Mir-362-P4 CM014356.1: 49797871-49797929 [+] UCSC Ensembl
Mir-362-P3b CM014356.1: 49801117-49801177 [+] UCSC Ensembl
Mir-188-P3 CM014356.1: 49803687-49803745 [+] UCSC Ensembl
Mir-362-P6 CM014356.1: 49805039-49805098 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCAGGGCUUUGUGCUCUGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUAUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGCGAGAGCUUCAUCUUCAUGUAGGACAG

Get precursor sequence

Structure

        10          20        30         40        50         60 
CGCAGGGCUUUGUGCUCU--    CCC     U-|        UAC UG    AGA-  GCUAU 
                    GCUC   CUCUC  AAUCCUUGC   C  GGUG    GU     \
                    CGAG   GAGAG  UUAGGAACG   G  CCAC    CG     C
GACAGGAUGUACUUCUACUU    AGC     UC^        --- GU    GUAA  UAAGU 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-362-P3a-v1_5p*

mirBase accession

MIMAT0006363

Sequence

0- UAAUCCUUGCUACCUGGGUGAGAGU -25

Get sequence

Proposed targets

TargetScanVert: mml-miR-500a-5p

Mature sequence

Mml-Mir-362-P3a-v1_3p

mirBase accession

MIMAT0026888

Sequence

38- AAUGCACCUGGGCAAGGAUUCUGA -62

Get sequence

Proposed targets

TargetScanVert: mml-miR-500a-3p