Mir-362-P3a-v2

MirGeneDB ID

Cfa-Mir-362-P3a-v2

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-500

Paralogues

Cfa-Mir-362-P3a-v1 Cfa-Mir-362-P3b Cfa-Mir-362-P4 Cfa-Mir-362-P6

Orthologues

Bta-Mir-362-P3a-v1 Bta-Mir-362-P3a-v2 Bta-Mir-362-P3a-v3 Cja-Mir-362-P3a-v1 Cja-Mir-362-P3a-v2 Dno-Mir-362-P3a-v1 Dno-Mir-362-P3a-v2 Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Hsa-Mir-362-P3a-v1 Hsa-Mir-362-P3a-v2 Mml-Mir-362-P3a-v1 Mml-Mir-362-P3a-v2 Mmr-Mir-362-P3a-v1 Mmr-Mir-362-P3a-v2 Ocu-Mir-362-P3a Pab-Mir-362-P3a-v1 Pab-Mir-362-P3a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chrX: 42779872-42779931 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3a-v2)

Mir-188-P1 chrX: 42774680-42774738 [+] UCSC Ensembl
Mir-188-P2 chrX: 42775072-42775131 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 42779871-42779932 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 42779872-42779931 [+] UCSC Ensembl
Mir-362-P4 chrX: 42780369-42780427 [+] UCSC Ensembl
Mir-188-P3 chrX: 42783965-42784023 [+] UCSC Ensembl
Mir-362-P6 chrX: 42785601-42785660 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGGGCCUCCUGAUCUGUUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGUGAGAGCUUCAUCUUCACGUAAGGAC

Get precursor sequence

Structure

        10          20        30         40        50           
GUGGGGCCUCCUGAUCU--    CCC     U-|        UAC UG    AGA-  GCUUU 
                   GUUC   CUCUC  AAUCCUUGC   C  GGUG    GU     \
                   CGAG   GAGAG  UUAGGAACG   G  CCAC    CG     C
CAGGAAUGCACUUCUACUU    AGU     UC^        --- GU    GUAA  UAAGU 
.       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-362-P3a-v2_5p*

mirBase accession

None

Sequence

0- AAUCCUUGCUACCUGGGUGAGAGU -24

Get sequence

Mature sequence

Cfa-Mir-362-P3a-v2_3p

mirBase accession

MIMAT0006759

Sequence

37- AAUGCACCUGGGCAAGGAUUCUG -60

Get sequence

Proposed targets

TargetScanVert: cfa-miR-500
miRDB: MIMAT0006759