Mir-362-P3a-v1

MirGeneDB ID

Bta-Mir-362-P3a-v1

Family name

MIR-362 (all species)

Seed

AUCCACC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-502b

Paralogues

Bta-Mir-362-P1-v1 Bta-Mir-362-P1-v2 Bta-Mir-362-P3a-v2 Bta-Mir-362-P3a-v3 Bta-Mir-362-P3b-v1 Bta-Mir-362-P3b-v2 Bta-Mir-362-P4 Bta-Mir-362-P6

Orthologues

Cfa-Mir-362-P3a-v1 Cfa-Mir-362-P3a-v2 Cja-Mir-362-P3a-v1 Cja-Mir-362-P3a-v2 Dno-Mir-362-P3a-v1 Dno-Mir-362-P3a-v2 Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Hsa-Mir-362-P3a-v1 Hsa-Mir-362-P3a-v2 Mml-Mir-362-P3a-v1 Mml-Mir-362-P3a-v2 Mmr-Mir-362-P3a-v1 Mmr-Mir-362-P3a-v2 Ocu-Mir-362-P3a Pab-Mir-362-P3a-v1 Pab-Mir-362-P3a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87736191-87736252 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3a-v1)

Mir-188-P1 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGUGGGACCGUCUGUUGUGGCUCCCCUCUCUAAUUCUUGCUCCCCAGGUGAGAGUGCUUUGUGAAUGCAAUCCACCUGGGCAAGGAUUCUGAAUGUGAGAGCUCCCAUCUUCCAUAUGGGAC

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Structure

        10         20         30         40        50        60  
CGUGGGACCGUCUGUUGU-     CCCUC-  U-|        UCC       A  G   UUUG 
                   GGCUC      UC  AAUUCUUGC   CCAGGUG GA UGC    \
                   UCGAG      AG  UUAGGAACG   GGUCCAC CU ACG    U
CAGGGUAUACCUUCUACCC     AGUGUA  UC^        ---       -  A   UAAG 
120       110       100        90        80            70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-362-P3a-v1_5p*

mirBase accession

None

Sequence

0- UAAUUCUUGCUCCCCAGGUGAGAGUGC -27

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Mature sequence

Bta-Mir-362-P3a-v1_3p

mirBase accession

MIMAT0009339

Sequence

38- AAUCCACCUGGGCAAGGAUUCUGA -62

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Proposed targets

TargetScanVert: bta-miR-502b