| MirGeneDB ID | Bta-Mir-362-P3b-v1 |
|---|---|
| Family name | MIR-362 (all species) |
| Seed | AUGCACC |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-500 |
| Paralogues | Bta-Mir-362-P1-v1 Bta-Mir-362-P1-v2 Bta-Mir-362-P3a-v1 Bta-Mir-362-P3a-v2 Bta-Mir-362-P3a-v3 Bta-Mir-362-P3b-v2 Bta-Mir-362-P4 Bta-Mir-362-P6 |
| Orthologues | Cfa-Mir-362-P3b Cpo-Mir-362-P3b Dno-Mir-362-P3b Eca-Mir-362-P3b-v1 Eca-Mir-362-P3b-v2 Hsa-Mir-362-P3b Mml-Mir-362-P3b Mmr-Mir-362-P3b-v1 Mmr-Mir-362-P3b-v2 Pab-Mir-362-P3b |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 87737938-87737999 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-362-P3b-v1) |
Mir-188-P1
NC_037357.1: 87724748-87724806 [+]
UCSC
Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGGAAUCUUCUGUCCUGGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGAGGGAGCACCAUCUUCGCCUAGAACAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUGGAAUCUUCUGUCCUG-- C U-| UAC UG AGAG CUUUC GCUCCC CUCUC AAUCCUUGC C GGUG UG \ CGAGGG GAGAG UUAGGAACG G CCAC AC U AACAAGAUCCGCUUCUACCA A UC^ --- GU GUA- GUAAG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Bta-Mir-362-P3b-v1_5p* |
| mirBase accession | MIMAT0009337 |
| Sequence |
0- UAAUCCUUGCUACCUGGGUGAGAGUG -26
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-500 |
| Mature sequence | Bta-Mir-362-P3b-v1_3p |
| mirBase accession | None |
| Sequence |
38- AAUGCACCUGGGCAAGGAUUCUGA -62
Get sequence
|
