Mir-362-P3b-v1

MirGeneDB ID

Eca-Mir-362-P3b-v1

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-500-2

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Eca-Mir-362-P3b-v2 Eca-Mir-362-P4 Eca-Mir-362-P5 Eca-Mir-362-P6

Orthologues

Bta-Mir-362-P3b-v1 Bta-Mir-362-P3b-v2 Cfa-Mir-362-P3b Cpo-Mir-362-P3b Dno-Mir-362-P3b Hsa-Mir-362-P3b Mml-Mir-362-P3b Mmr-Mir-362-P3b-v1 Mmr-Mir-362-P3b-v2 Pab-Mir-362-P3b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41480028-41480089 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3b-v1)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGAAUCUUCUGUUCUGGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCCGAGAGGGAGAGUGUCAUCUUCGCAUAGAACAG

Get precursor sequence

Structure

        10          20        30         40        50         60 
CUGGAAUCUUCUGUUCUG--    C       U-|        UAC UG    AGA-  GCUUU 
                    GCUC CCCUCUC  AAUCCUUGC   C  GGUG    GU     \
                    UGAG GGGAGAG  UUAGGAACG   G  CCAC    CG     C
GACAAGAUACGCUUCUACUG    A       CC^        --- GU    GUAA  UAAGU 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-362-P3b-v1_5p*

mirBase accession

MIMAT0013223

Sequence

0- UAAUCCUUGCUACCUGGGUGAGAGU -25

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Mature sequence

Eca-Mir-362-P3b-v1_3p

mirBase accession

None

Sequence

38- AAUGCACCUGGGCAAGGAUUCCGA -62

Get sequence