Mir-362-P6

MirGeneDB ID

Eca-Mir-362-P6

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-502

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Eca-Mir-362-P3b-v1 Eca-Mir-362-P3b-v2 Eca-Mir-362-P4 Eca-Mir-362-P5

Orthologues

Bta-Mir-362-P6 Cfa-Mir-362-P6 Cpo-Mir-362-P6 Dno-Mir-362-P6 Ete-Mir-362-P6 Hsa-Mir-362-P6 Laf-Mir-362-P6 Mml-Mir-362-P6 Mmr-Mir-362-P6 Mmu-Mir-362-P6 Ocu-Mir-362-P6 Pab-Mir-362-P6 Rno-Mir-362-P6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P6)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGAGCCUUCUGCCCUGCUCCCCCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUGUCUCAAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGUGGGCUUGACAGCACCAAGAAGGA

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Structure

        10          20        30         40        50        60 
CCUGAGCCUUCUGCCCU--    C        -|        UAU UG     UAG   UGUC 
                   GCUC CCCUCUCU AAUCCUUGC   C  GGUGC   UGC    \
                   CGGG GGGAGAGA UUAGGAACG   G  CCACG   ACG    U
AGGAAGAACCACGACAGUU    U        C^        --- GU     UA-   UAAC 
.       110       100        90        80           70

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-362-P6_5p*

mirBase accession

MIMAT0013225

Sequence

0- AAUCCUUGCUAUCUGGGUGCUAGUGC -26

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Mature sequence

Eca-Mir-362-P6_3p

mirBase accession

MIMAT0013226

Sequence

37- AAUGCACCUGGGCAAGGAUUCAG -60

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