Mir-362-P6

MirGeneDB ID

Eca-Mir-362-P6

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-502

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Eca-Mir-362-P3b-v1 Eca-Mir-362-P3b-v2 Eca-Mir-362-P4 Eca-Mir-362-P5

Orthologues

Bta-Mir-362-P6 Cfa-Mir-362-P6 Cpo-Mir-362-P6 Dno-Mir-362-P6 Ete-Mir-362-P6 Hsa-Mir-362-P6 Laf-Mir-362-P6 Mml-Mir-362-P6 Mmr-Mir-362-P6 Mmu-Mir-362-P6 Ocu-Mir-362-P6 Pab-Mir-362-P6 Rno-Mir-362-P6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P6)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGAGCCUUCUGCCCUGCUCCCCCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUGUCUCAAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGUGGGCUUGACAGCACCAAGAAGGA

Get precursor sequence

Structure

        10          20        30         40        50        60 
CCUGAGCCUUCUGCCCU--    C        -|        UAU UG     UAG   UGUC 
                   GCUC CCCUCUCU AAUCCUUGC   C  GGUGC   UGC    \
                   CGGG GGGAGAGA UUAGGAACG   G  CCACG   ACG    U
AGGAAGAACCACGACAGUU    U        C^        --- GU     UA-   UAAC 
.       110       100        90        80           70

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-362-P6_5p*

mirBase accession

MIMAT0013225

Sequence

0- AAUCCUUGCUAUCUGGGUGCUAGUGC -26

Get sequence

Mature sequence

Eca-Mir-362-P6_3p

mirBase accession

MIMAT0013226

Sequence

37- AAUGCACCUGGGCAAGGAUUCAG -60

Get sequence