| MirGeneDB ID | Pab-Mir-362-P6 |
|---|---|
| Family name | MIR-362 (all species) |
| Seed | AUGCACC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-362-P3a-v1 Pab-Mir-362-P3a-v2 Pab-Mir-362-P3b Pab-Mir-362-P4 Pab-Mir-362-P5 |
| Orthologues | Bta-Mir-362-P6 Cfa-Mir-362-P6 Cpo-Mir-362-P6 Dno-Mir-362-P6 Eca-Mir-362-P6 Ete-Mir-362-P6 Hsa-Mir-362-P6 Laf-Mir-362-P6 Mml-Mir-362-P6 Mmr-Mir-362-P6 Mmu-Mir-362-P6 Ocu-Mir-362-P6 Rno-Mir-362-P6 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 50290996-50291055 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCCAAGCCUUCUGCCCUGCUCCCCCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUGUCUCAAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGGGAGCUCAACUGUACCAACAAGGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCCAAGCCUUCUGCCCU-- -| UAU UG UAG UGUC GCUCCCCCUCUCU AAUCCUUGC C GGUGC UGC \ CGAGGGGGAGAGA UUAGGAACG G CCACG ACG U AGGAACAACCAUGUCAACU C^ --- GU UA- UAAC . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Drosha cut -1 on the 5p arm. |
| 3' NTU | No |
| Motifs | UG at 5p(-14), UGUG in loop |
| Star sequence | Pab-Mir-362-P6_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AAUCCUUGCUAUCUGGGUGCUAGUGC -26
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|
| Mature sequence | Pab-Mir-362-P6_3p |
| mirBase accession | None |
| Sequence |
37- AAUGCACCUGGGCAAGGAUUCAG -60
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|
