MirGeneDB ID | Pab-Mir-362-P4 |
Family name |
MIR-362 (all species) |
Seed |
AUCCUUG |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-362-P3a-v1
Pab-Mir-362-P3a-v2
Pab-Mir-362-P3b
Pab-Mir-362-P5
Pab-Mir-362-P6
|
Orthologues |
Bta-Mir-362-P4
Cfa-Mir-362-P4
Cja-Mir-362-P4
Cpo-Mir-362-P4
Dno-Mir-362-P4
Eca-Mir-362-P4
Ete-Mir-362-P4
Hsa-Mir-362-P4
Laf-Mir-362-P4
Mml-Mir-362-P4
Mmr-Mir-362-P4
Mmu-Mir-362-P4
Ocu-Mir-362-P4
Rno-Mir-362-P4
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 50285340-50285398 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAGAGCCUUCUUGUCUGCUCCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCUAUUUCAGUGCAACACACCUAUUCAAGGAUUCAAAGAGGCUGAGCCUUGUCUGCAUGUAGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAGAGCCUUCUUGUCU- CC C-| ACC AG UAUU
GCUC CCUCU GAAUCCUUGGA UAGGUGUG UGC \
CGAG GGAGA CUUAGGAACUU AUCCACAC ACG U
GAAGAUGUACGUCUGUUC UC AA^ --- A- UGAC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-362-P4_5p |
mirBase accession | None |
Sequence |
0- AAUCCUUGGAACCUAGGUGUGAGUGC -26
Get sequence
|
Star sequence |
Pab-Mir-362-P4_3p* |
mirBase accession | None |
Sequence |
37- AACACACCUAUUCAAGGAUUCA -59
Get sequence
|