MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-362-P4

Family name MIR-362 (all species)
Seed AUCCUUG
Species Horse (Equus caballus)
MiRBase ID eca-mir-362
Paralogues Eca-Mir-362-P3a-v1  Eca-Mir-362-P3a-v2  Eca-Mir-362-P3b-v1  Eca-Mir-362-P3b-v2  Eca-Mir-362-P5  Eca-Mir-362-P6 
Orthologues Bta-Mir-362-P4  Cfa-Mir-362-P4  Cja-Mir-362-P4  Cpo-Mir-362-P4  Dno-Mir-362-P4  Ete-Mir-362-P4  Hsa-Mir-362-P4  Laf-Mir-362-P4  Mml-Mir-362-P4  Mmr-Mir-362-P4  Mmu-Mir-362-P4  Ocu-Mir-362-P4  Pab-Mir-362-P4  Rno-Mir-362-P4 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P4)
Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUGGCCUUCUUGUCUGCUCCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCCAUUUCAGUGCAACACACCUAUUCAAGGAUUCAAAGAGGCUGAGCCCUGUCUGCAUGUAGAAG
Get precursor sequence
Structure
        10         20         30        40        50        60 
GCCUGGCCUUCUUGUCU-    CC     C-|          ACC        AG   CAUU 
                  GCUC  CCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG  GGAGA  CUUAGGAACUU   AUCCACAC  ACG    U
GAAGAUGUACGUCUGUCC    UC     AA^          ---        A-   UGAC 
       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-362-P4_5p

mirBase accessionMIMAT0013210
Sequence
0- AAUCCUUGGAACCUAGGUGUGAGUGC -26
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Star sequence

Eca-Mir-362-P4_3p*

mirBase accessionMIMAT0013211
Sequence
37- AACACACCUAUUCAAGGAUUCA -59
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