Mir-362-P4

MirGeneDB ID

Eca-Mir-362-P4

Family name

MIR-362 (all species)

Seed

AUCCUUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-362

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Eca-Mir-362-P3b-v1 Eca-Mir-362-P3b-v2 Eca-Mir-362-P5 Eca-Mir-362-P6

Orthologues

Bta-Mir-362-P4 Cfa-Mir-362-P4 Cja-Mir-362-P4 Cpo-Mir-362-P4 Dno-Mir-362-P4 Ete-Mir-362-P4 Hsa-Mir-362-P4 Laf-Mir-362-P4 Mml-Mir-362-P4 Mmr-Mir-362-P4 Mmu-Mir-362-P4 Ocu-Mir-362-P4 Pab-Mir-362-P4 Rno-Mir-362-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41478747-41478805 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P4)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUGGCCUUCUUGUCUGCUCCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCCAUUUCAGUGCAACACACCUAUUCAAGGAUUCAAAGAGGCUGAGCCCUGUCUGCAUGUAGAAG

Get precursor sequence

Structure

        10         20         30        40        50        60 
GCCUGGCCUUCUUGUCU-    CC     C-|          ACC        AG   CAUU 
                  GCUC  CCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG  GGAGA  CUUAGGAACUU   AUCCACAC  ACG    U
GAAGAUGUACGUCUGUCC    UC     AA^          ---        A-   UGAC 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-362-P4_5p

mirBase accession

MIMAT0013210

Sequence

0- AAUCCUUGGAACCUAGGUGUGAGUGC -26

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Star sequence

Eca-Mir-362-P4_3p*

mirBase accession

MIMAT0013211

Sequence

37- AACACACCUAUUCAAGGAUUCA -59

Get sequence