Mir-188-P3

MirGeneDB ID

Eca-Mir-188-P3

Family name

MIR-188 (all species)

Seed

ACCCAUU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-660

Paralogues

Eca-Mir-188-P1 Eca-Mir-188-P2

Orthologues

Bta-Mir-188-P3 Cfa-Mir-188-P3 Cja-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Ete-Mir-188-P3 Hsa-Mir-188-P3 Laf-Mir-188-P3 Mml-Mir-188-P3 Mmr-Mir-188-P3 Ocu-Mir-188-P3 Pab-Mir-188-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41481460-41481518 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P3)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCAGAAGAACGAACUGCUCCUUCUCCUGUACCCAUUGCAUAUCGGAGUUGUGAAUUCUGAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGGCGAGCCUUGUCAUCAUGAACCUUC

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Structure

        10          20        30         40        50         
GUGCAGAAGAACGAACU--    C          C-|   U      C    U   GAAUU 
                   GCUC UUCUCCUGUA  CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGGACAU  GGUA CGUGUG CCUC ACG     C
CUUCCAAGUACUACUGUUC    C          UA^   -      U    C   AAAGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-188-P3_5p

mirBase accession

MIMAT0013241

Sequence

0- UACCCAUUGCAUAUCGGAGUUGU -23

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Star sequence

Eca-Mir-188-P3_3p*

mirBase accession

None

Sequence

36- ACCUCCUGUGUGCAUGGAUUACA -59

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