Mir-188-P3

MirGeneDB ID

Eca-Mir-188-P3

Family name

MIR-188 (all species)

Seed

ACCCAUU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-660

Paralogues

Eca-Mir-188-P1 Eca-Mir-188-P2

Orthologues

Bta-Mir-188-P3 Cfa-Mir-188-P3 Cja-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Ete-Mir-188-P3 Hsa-Mir-188-P3 Laf-Mir-188-P3 Mml-Mir-188-P3 Mmr-Mir-188-P3 Ocu-Mir-188-P3 Pab-Mir-188-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41481460-41481518 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P3)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCAGAAGAACGAACUGCUCCUUCUCCUGUACCCAUUGCAUAUCGGAGUUGUGAAUUCUGAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGGCGAGCCUUGUCAUCAUGAACCUUC

Get precursor sequence

Structure

        10          20        30         40        50         
GUGCAGAAGAACGAACU--    C          C-|   U      C    U   GAAUU 
                   GCUC UUCUCCUGUA  CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGGACAU  GGUA CGUGUG CCUC ACG     C
CUUCCAAGUACUACUGUUC    C          UA^   -      U    C   AAAGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-188-P3_5p

mirBase accession

MIMAT0013241

Sequence

0- UACCCAUUGCAUAUCGGAGUUGU -23

Get sequence

Star sequence

Eca-Mir-188-P3_3p*

mirBase accession

None

Sequence

36- ACCUCCUGUGUGCAUGGAUUACA -59

Get sequence