Mir-188-P3

MirGeneDB ID

Bta-Mir-188-P3

Family name

MIR-188 (all species)

Seed

ACCCAUU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-660

Paralogues

Bta-Mir-188-P1 Bta-Mir-188-P2

Orthologues

Cfa-Mir-188-P3 Cja-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Eca-Mir-188-P3 Ete-Mir-188-P3 Hsa-Mir-188-P3 Laf-Mir-188-P3 Mml-Mir-188-P3 Mmr-Mir-188-P3 Ocu-Mir-188-P3 Pab-Mir-188-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87740093-87740151 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P3)

Mir-188-P1 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUAGAAGAAUGAACUGCUCCUUCUCCCGUACCCAUUGCAUAUCGGAGCUGUGAAUUCUCAAAGCACCUCCUAUGUGCAUGGAUUACAGGAGGGGGGAGCCCUGUCAUCAAGUGCCUU

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Structure

        10         20         30         40        50         
GUGUAGAAGAAUGAACU-   -        C   C-|   U      C    C   GAAUU 
                  GCU CCUUCUCC GUA  CCAU GCAUAU GGAG UGU     \
                  CGA GGGGGAGG CAU  GGUA CGUGUA CCUC ACG     C
UUCCGUGAACUACUGUCC   G        A   UA^   -      U    C   AAACU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-188-P3_5p

mirBase accession

MIMAT0004344

Sequence

0- UACCCAUUGCAUAUCGGAGCUGU -23

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Proposed targets

TargetScanVert: bta-miR-660

Star sequence

Bta-Mir-188-P3_3p*

mirBase accession

None

Sequence

36- ACCUCCUAUGUGCAUGGAUUACA -59

Get sequence