| MirGeneDB ID | Pab-Mir-188-P3 |
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| Family name |
MIR-188 (all species) |
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| Seed |
ACCCAUU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
Pab-Mir-188-P1
Pab-Mir-188-P2
|
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| Orthologues |
Bta-Mir-188-P3
Cfa-Mir-188-P3
Cja-Mir-188-P3
Cpo-Mir-188-P3
Dno-Mir-188-P3
Eca-Mir-188-P3
Ete-Mir-188-P3
Hsa-Mir-188-P3
Laf-Mir-188-P3
Mml-Mir-188-P3
Mmr-Mir-188-P3
Ocu-Mir-188-P3
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 50289638-50289696 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCCUUGUCAUCGUGAAUCUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUGCAGAAGAAUGAACU-- C CAUAC-| U C U GAAUU
GCUC UUCUCC CCAU GCAUAU GGAG UGU \
CGAG GGGAGG GGUA CGUGUG CCUC ACA C
CUUCUAAGUGCUACUGUUC U ACAUUA^ - U C AAACU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-188-P3_5p |
| mirBase accession | None |
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| Sequence |
0- UACCCAUUGCAUAUCGGAGUUGU -23
Get sequence
|
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| Star sequence |
Pab-Mir-188-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- ACCUCCUGUGUGCAUGGAUUACA -59
Get sequence
|
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