| MirGeneDB ID | Pab-Mir-188-P2 |
|---|---|
| Family name | MIR-188 (all species) |
| Seed | AUCCCUU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-188-P1 Pab-Mir-188-P3 |
| Orthologues | Bta-Mir-188-P2 Cfa-Mir-188-P2 Cja-Mir-188-P2 Cpo-Mir-188-P2 Dno-Mir-188-P2 Eca-Mir-188-P2 Hsa-Mir-188-P2 Laf-Mir-188-P2 Mml-Mir-188-P2 Mmr-Mir-188-P2 Mmu-Mir-188-P2 Ocu-Mir-188-P2 Rno-Mir-188-P2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 50279907-50279966 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAGCAAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCCUUGCUCUCGet precursor sequence |
| Structure | 10 20 30 40 50 AGAGCAAGCCCUUCCCU-- -| UC CA UC GU UGAGCUU GCUC CC UCU CA CCUUGCAUG GGAGGG U CGAG GG AGG GU GGGACGUAC CCUCCC C CUCUCGUUCCUUUCGACUC C^ U- AC UU AC CAAAAGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Pab-Mir-188-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
|
| Star sequence | Pab-Mir-188-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CUCCCACAUGCAGGGUUUGCA -60
Get sequence
|
