MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-188-P2

Family name MIR-188 (all species)
Seed AUCCCUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-188
Paralogues Cpo-Mir-188-P1  Cpo-Mir-188-P3 
Orthologues Bta-Mir-188-P2  Cfa-Mir-188-P2  Cja-Mir-188-P2  Dno-Mir-188-P2  Eca-Mir-188-P2  Hsa-Mir-188-P2  Laf-Mir-188-P2  Mml-Mir-188-P2  Mmr-Mir-188-P2  Mmu-Mir-188-P2  Ocu-Mir-188-P2  Pab-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_132: 3003465-3003524 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-188-P2)		 Mir-188-P1 scaffold_132: 3003104-3003162 [+] UCSC
Mir-188-P2 scaffold_132: 3003465-3003524 [+] UCSC
Mir-362-P4 scaffold_132: 3009085-3009144 [+] UCSC
Mir-362-P5 scaffold_132: 3009773-3009832 [+] UCSC
Mir-362-P3b scaffold_132: 3010278-3010339 [+] UCSC
Mir-188-P3 scaffold_132: 3012570-3012628 [+] UCSC
Mir-362-P6 scaffold_132: 3014248-3014306 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGAGCGAGCUCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGGAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCCUUGCUCUC
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Structure
        10          20         30        40        50         
AGAGCGAGCUCUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       C
CUCUCGUUCCUUUCGACUU    U^ U-   AC  UU         AC      CAAAGGU 
.       110       100         90        80        70        60
Deep sequencing
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CommentThe Dicer cut is consistently +3 across mammals.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-188-P2_5p
mirBase accessionMIMAT0047060
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGU -22
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Co-mature sequence

Cpo-Mir-188-P2_3p
mirBase accessionMIMAT0047061
Sequence 
39- CUCCCACAUGCAGGGUUUGCA -60
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