MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-362-P6

Family name MIR-362 (all species)
Seed AUCCUUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-502a
Paralogues Cpo-Mir-362-P3b  Cpo-Mir-362-P4  Cpo-Mir-362-P5 
Orthologues Bta-Mir-362-P6  Cfa-Mir-362-P6  Dno-Mir-362-P6  Eca-Mir-362-P6  Ete-Mir-362-P6  Hsa-Mir-362-P6  Laf-Mir-362-P6  Mml-Mir-362-P6  Mmr-Mir-362-P6  Mmu-Mir-362-P6  Ocu-Mir-362-P6  Pab-Mir-362-P6  Rno-Mir-362-P6 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_132: 3014248-3014306 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-362-P6)		 Mir-188-P1 scaffold_132: 3003104-3003162 [+] UCSC
Mir-188-P2 scaffold_132: 3003465-3003524 [+] UCSC
Mir-362-P4 scaffold_132: 3009085-3009144 [+] UCSC
Mir-362-P5 scaffold_132: 3009773-3009832 [+] UCSC
Mir-362-P3b scaffold_132: 3010278-3010339 [+] UCSC
Mir-188-P3 scaffold_132: 3012570-3012628 [+] UCSC
Mir-362-P6 scaffold_132: 3014248-3014306 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCUGAGCCUUCUGCCCUGCUCCCUCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUGUCUCAAUGCAAUGUACCUGGGCAAGGGUUCAUAGAGGGUGAGCACAUCUGCAACCAGAAGG
Get precursor sequence
Structure
        10         20        30         40        50        60 
CCUGAGCCUUCUGCCCU-    C      CU-|        UAU UG     UAG   UGUC 
                  GCUC CUCUCU   AAUCCUUGC   C  GGUGC   UGC    \
                  CGAG GGGAGA   UUGGGAACG   G  CCAUG   ACG    U
GGAAGACCAACGUCUACA    U      UAC^        --- GU     UA-   UAAC 
       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-362-P6_5p
mirBase accessionMIMAT0047305
Sequence 
0- AAUCCUUGCUAUCUGGGUGCUAGUGC -26
Get sequence
Co-mature sequence

Cpo-Mir-362-P6_3p
mirBase accessionMIMAT0047306
Sequence 
37- AAUGUACCUGGGCAAGGGUUCA -59
Get sequence