MirGeneDB ID | Laf-Mir-362-P6 |
Family name |
MIR-362 (all species) |
Seed |
AUGCACC |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-362-P1
Laf-Mir-362-P2
Laf-Mir-362-P4
|
Orthologues |
Bta-Mir-362-P6
Cfa-Mir-362-P6
Cpo-Mir-362-P6
Dno-Mir-362-P6
Eca-Mir-362-P6
Ete-Mir-362-P6
Hsa-Mir-362-P6
Mml-Mir-362-P6
Mmr-Mir-362-P6
Mmu-Mir-362-P6
Ocu-Mir-362-P6
Pab-Mir-362-P6
Rno-Mir-362-P6
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010083.1: 316274-316333 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUGAGUCUUCUACCCUGCUCCCUCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUGUCUCAAUGCAAUGCACCUAGGCAAGGAUUCAGAGAGGGUGAGCUCAGCUGCAUCAAGAAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUUGAGUCUUCUACCCU-- C -| UAU UAG UGUC
GCUC CUCUCUCU AAUCCUUGC CUGGGUGC UGC \
CGAG GGGAGAGA UUAGGAACG GAUCCACG ACG U
AGGAAGAACUACGUCGACU U C^ --- UA- UAAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Laf-Mir-362-P6_5p* |
mirBase accession | None |
Sequence |
0- AAUCCUUGCUAUCUGGGUGCUAGUGC -26
Get sequence
|
Mature sequence |
Laf-Mir-362-P6_3p |
mirBase accession | None |
Sequence |
37- AAUGCACCUAGGCAAGGAUUCAG -60
Get sequence
|