| MirGeneDB ID | Pab-Mir-188-P1 |
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| Family name |
MIR-188 (all species) |
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| Seed |
AUGCCUU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
Pab-Mir-188-P2
Pab-Mir-188-P3
|
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| Orthologues |
Bta-Mir-188-P1
Cfa-Mir-188-P1
Cja-Mir-188-P1
Cpo-Mir-188-P1
Dno-Mir-188-P1
Eca-Mir-188-P1
Hsa-Mir-188-P1
Laf-Mir-188-P1
Mml-Mir-188-P1
Mmr-Mir-188-P1
Mmu-Mir-188-P1
Ocu-Mir-188-P1
Rno-Mir-188-P1
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 50279557-50279615 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGCAGACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCCUCUCCAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCAGACCUCCCGACUU--| U C C U A A CC UGGCAU
GCUU CUCU CU CA GCCUUG GUGU GGA GU \
CGAG GAGA GA GU CGGAAC CACA CCU CA C
UGACCUCUCCCUUCUCUUC^ C A C U C C CC UUAAUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-188-P1_5p |
| mirBase accession | None |
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| Sequence |
0- CAUGCCUUGAGUGUAGGACCGU -22
Get sequence
|
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| Star sequence |
Pab-Mir-188-P1_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CCUCCCACACCCAAGGCUUGCA -59
Get sequence
|
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