MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-188-P1

Family name MIR-188 (all species)
Seed AUGCCUU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-532
Paralogues Cfa-Mir-188-P2  Cfa-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cja-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Eca-Mir-188-P1  Hsa-Mir-188-P1  Laf-Mir-188-P1  Mml-Mir-188-P1  Mmr-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Pab-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 42774680-42774738 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-188-P1 chrX: 42774680-42774738 [+] UCSC Ensembl
Mir-188-P2 chrX: 42775072-42775131 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 42779871-42779932 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 42779872-42779931 [+] UCSC Ensembl
Mir-362-P4 chrX: 42780369-42780427 [+] UCSC Ensembl
Mir-188-P3 chrX: 42783965-42784023 [+] UCSC Ensembl
Mir-362-P6 chrX: 42785601-42785660 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGAACCUUCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCACCUCCUUCCUCUCCUAU
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Structure
        10          20        30        40        50         
AGUGAACCUUCUGACUU--|   U       A  U      A    A   CC  UGGUAU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAA GGGAGGA GU CGGAAC CACA CCU  CA      C
UAUCCUCUCCUUCCUCCAC^   C       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-188-P1_5p
mirBase accessionMIMAT0006758
Sequence 
0- CAUGCCUUGAGUGUAGGACCGU -22
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Proposed targets TargetScanVert: cfa-miR-532
miRDB: MIMAT0006758
Star sequence

Cfa-Mir-188-P1_3p*
mirBase accessionNone
Sequence 
37- CCUCCCACACCCAAGGCUUGCA -59
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