MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-188-P1

Family name MIR-188 (all species)
Seed AUGCCUU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-532
Paralogues Ocu-Mir-188-P2  Ocu-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cja-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Eca-Mir-188-P1  Hsa-Mir-188-P1  Laf-Mir-188-P1  Mml-Mir-188-P1  Mmr-Mir-188-P1  Mmu-Mir-188-P1  Pab-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrX: 34232287-34232345 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-188-P1 chrX: 34232287-34232345 [+] UCSC Ensembl
Mir-188-P2 chrX: 34232654-34232713 [+] UCSC Ensembl
Mir-362-P2 chrX: 34235397-34235456 [+] UCSC Ensembl
Mir-362-P3a chrX: 34237519-34237579 [+] UCSC Ensembl
Mir-362-P4 chrX: 34238027-34238085 [+] UCSC Ensembl
Mir-362-P5 chrX: 34238810-34238869 [+] UCSC Ensembl
Mir-188-P3 chrX: 34242048-34242106 [+] UCSC Ensembl
Mir-362-P6 chrX: 34243943-34244002 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAAACCUCCUAACUUGCUUUCUCUCUUCCAUGCCUUGAGUGUAGGACUGUUGGAAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGAGUGAGCCUUCUCUUCCCUCUCCAGU
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Structure
        10          20        30        40        50         
AGCAAACCUCCUAACUU--|   U       C  U      A    A   CU  UGGAAU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAG GAGAGGA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCCUUCUCUUC^   U       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-188-P1_5p
mirBase accessionMIMAT0048519
Sequence 
0- CAUGCCUUGAGUGUAGGACUGU -22
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Star sequence

Ocu-Mir-188-P1_3p*
mirBase accessionMIMAT0048520
Sequence 
37- CCUCCCACACCCAAGGCUUGCA -59
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