MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-362-P2

Family name MIR-362 (all species)
Seed AUGCACC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-502b
Paralogues Ocu-Mir-362-P3a  Ocu-Mir-362-P4  Ocu-Mir-362-P5  Ocu-Mir-362-P6 
Orthologues Laf-Mir-362-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrX: 34235397-34235456 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P2)
Mir-188-P1 chrX: 34232287-34232345 [+] UCSC Ensembl
Mir-188-P2 chrX: 34232654-34232713 [+] UCSC Ensembl
Mir-362-P2 chrX: 34235397-34235456 [+] UCSC Ensembl
Mir-362-P3a chrX: 34237519-34237579 [+] UCSC Ensembl
Mir-362-P4 chrX: 34238027-34238085 [+] UCSC Ensembl
Mir-362-P5 chrX: 34238810-34238869 [+] UCSC Ensembl
Mir-188-P3 chrX: 34242048-34242106 [+] UCSC Ensembl
Mir-362-P6 chrX: 34243943-34244002 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUGAGCCUUCUCUUUUGCUCUUUCUCUCUAAUCCUUGAUACCUGGUGUUAGUGCUUUCUAUGUGCAAUGCACCUGGGCAAGGAUUUAGAGUGGGAUGAGCCUUAUCUGCCGAUGGAAG
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Structure
        10        20         30         40        50           
GCUUGAGCCUUCUCUUUU    - UU U    -|       AUA  U     UA-  GCUUU 
                  GCUC U  C CUCU AAUCCUUG   CC GGUGU   GU     \
                  CGAG A  G GAGA UUAGGAAC   GG CCACG   CG     C
GAAGGUAGCCGUCUAUUC    U GG U    U^       G--  U     UAA  UGUAU 
.       110       100        90        80          70
Deep sequencing
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CommentThere is an orthologous sequence to the rabbit and cow in both human and Cavia (and elephant) but no reads from human or Cavia and a very weak secondary structure. This might be an example of a recently lost miRNA.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-362-P2_5p*

mirBase accessionMIMAT0048497
Sequence
0- UAAUCCUUGAUACCUGGUGUUAGU -24
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Mature sequence

Ocu-Mir-362-P2_3p

mirBase accessionMIMAT0048498
Sequence
37- AAUGCACCUGGGCAAGGAUUUAG -60
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