Mir-362-P3a-v2

MirGeneDB ID

Eca-Mir-362-P3a-v2

Family name

MIR-362 (all species)

Seed

UGCACCU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-500-1

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3b-v1 Eca-Mir-362-P3b-v2 Eca-Mir-362-P4 Eca-Mir-362-P5 Eca-Mir-362-P6

Orthologues

Bta-Mir-362-P3a-v1 Bta-Mir-362-P3a-v2 Bta-Mir-362-P3a-v3 Cfa-Mir-362-P3a-v1 Cfa-Mir-362-P3a-v2 Cja-Mir-362-P3a-v1 Cja-Mir-362-P3a-v2 Dno-Mir-362-P3a-v1 Dno-Mir-362-P3a-v2 Hsa-Mir-362-P3a-v1 Hsa-Mir-362-P3a-v2 Mml-Mir-362-P3a-v1 Mml-Mir-362-P3a-v2 Mmr-Mir-362-P3a-v1 Mmr-Mir-362-P3a-v2 Ocu-Mir-362-P3a Pab-Mir-362-P3a-v1 Pab-Mir-362-P3a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41478213-41478274 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3a-v2)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCAGGGCCUUCUGCUCUGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGUUGUCUGAAUGCAAUGCACCUGGGCAAGGAUUCCGAGAGCGAGAGCUUCAUCUUCAUUUAGGACAG

Get precursor sequence

Structure

        10          20        30         40        50        60 
UGCAGGGCCUUCUGCUCU--    CCC     U-|        UAC UG    AGAGUGUUGU 
                    GCUC   CUCUC  AAUCCUUGC   C  GGUG          C
                    CGAG   GAGAG  UUAGGAACG   G  CCAC          U
GACAGGAUUUACUUCUACUU    AGC     CC^        --- GU    GUAACGUAAG 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-362-P3a-v2_5p*

mirBase accession

MIMAT0013223

Sequence

0- UAAUCCUUGCUACCUGGGUGAGAG -24

Get sequence

Mature sequence

Eca-Mir-362-P3a-v2_3p

mirBase accession

None

Sequence

39- AUGCACCUGGGCAAGGAUUCCGA -62

Get sequence