Mir-362-P3a-v2

MirGeneDB ID

Hsa-Mir-362-P3a-v2

Family name

MIR-362 (all species)

Seed

UGCACCU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-500a

Paralogues

Hsa-Mir-362-P3a-v1 Hsa-Mir-362-P3b Hsa-Mir-362-P4 Hsa-Mir-362-P5 Hsa-Mir-362-P6

Orthologues

Bta-Mir-362-P3a-v1 Bta-Mir-362-P3a-v2 Bta-Mir-362-P3a-v3 Cfa-Mir-362-P3a-v1 Cfa-Mir-362-P3a-v2 Cja-Mir-362-P3a-v1 Cja-Mir-362-P3a-v2 Dno-Mir-362-P3a-v1 Dno-Mir-362-P3a-v2 Eca-Mir-362-P3a-v1 Eca-Mir-362-P3a-v2 Mml-Mir-362-P3a-v1 Mml-Mir-362-P3a-v2 Mmr-Mir-362-P3a-v1 Mmr-Mir-362-P3a-v2 Ocu-Mir-362-P3a Pab-Mir-362-P3a-v1 Pab-Mir-362-P3a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 50008443-50008504 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3a-v2)

Mir-188-P1 chrX: 50003167-50003225 [+] UCSC Ensembl
Mir-188-P2 chrX: 50003517-50003576 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P4 chrX: 50008968-50009026 [+] UCSC Ensembl
Mir-362-P5 chrX: 50009735-50009794 [+] UCSC Ensembl
Mir-362-P3b chrX: 50010681-50010742 [+] UCSC Ensembl
Mir-188-P3 chrX: 50013256-50013314 [+] UCSC Ensembl
Mir-362-P6 chrX: 50014612-50014671 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACAGGGCUUUGUGUUCUGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUGUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGCGAGAGCUUCAUCUUCGUGUAGGACAG

Get precursor sequence

Structure

        10          20        30         40        50         60 
CACAGGGCUUUGUGUUCU--    CCC     U-|        UAC UG    AGA-  GCUGU 
                    GCUC   CUCUC  AAUCCUUGC   C  GGUG    GU     \
                    CGAG   GAGAG  UUAGGAACG   G  CCAC    CG     C
GACAGGAUGUGCUUCUACUU    AGC     UC^        --- GU    GUAA  UAAGU 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-362-P3a-v2_5p*

mirBase accession

MIMAT0004773

Sequence

0- UAAUCCUUGCUACCUGGGUGAGAGU -25

Get sequence

Proposed targets

microrna.org: MIMAT0004773
TargetScanVert: hsa-miR-500a-5p
TargetMiner: hsa-miR-500a-5p
miRDB: MIMAT0004773

Mature sequence

Hsa-Mir-362-P3a-v2_3p

mirBase accession

MIMAT0002871

Sequence

39- AUGCACCUGGGCAAGGAUUCUGA -62

Get sequence

Proposed targets

microrna.org: MIMAT0002871
TargetScanVert: hsa-miR-500a-3p
TargetMiner: hsa-miR-500a-3p
miRDB: MIMAT0002871