MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-362-P3b

Family name MIR-362 (all species)
Seed AAUCCUU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-362-P3a-v1  Pab-Mir-362-P3a-v2  Pab-Mir-362-P4  Pab-Mir-362-P5  Pab-Mir-362-P6 
Orthologues Bta-Mir-362-P3b-v1  Bta-Mir-362-P3b-v2  Cfa-Mir-362-P3b  Cpo-Mir-362-P3b  Dno-Mir-362-P3b  Eca-Mir-362-P3b-v1  Eca-Mir-362-P3b-v2  Hsa-Mir-362-P3b  Mml-Mir-362-P3b  Mmr-Mir-362-P3b-v1  Mmr-Mir-362-P3b-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054702.2: 50287048-50287109 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGAAUCUUCUGUCCUGGUUCCCCCUCUCUAAUCCUUGCUACCUGUGUGAGAGUGCUUUCUGAAUGCAGUGCACCCAGGCAAGGAUUCUGCAAGGGGGAGUGACAUCUUCGCAUAGGACAG
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Structure
        10          20        30         40        50        60 
CUGGAAUCUUCUGUCCUGG--        CUCU-|         ACCU     AGA  GCUUU 
                     UUCCCCCU     AAUCCUUGCU    GUGUG   GU     \
                     GAGGGGGA     UUAGGAACGG    CACGU   CG     C
GACAGGAUACGCUUCUACAGU        ACGUC^         ACC-     GA-  UAAGU 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-362-P3b_5p (predicted)

mirBase accessionNone
Sequence
0- UAAUCCUUGCUACCUGUGUGAGAGU -25
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Star sequence

Pab-Mir-362-P3b_3p* (predicted)

mirBase accessionNone
Sequence
38- AGUGCACCCAGGCAAGGAUUCUGC -62
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