MirGeneDB ID | Pab-Mir-362-P3b |
Family name |
MIR-362 (all species) |
Seed |
AAUCCUU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-362-P3a-v1
Pab-Mir-362-P3a-v2
Pab-Mir-362-P4
Pab-Mir-362-P5
Pab-Mir-362-P6
|
Orthologues |
Bta-Mir-362-P3b-v1
Bta-Mir-362-P3b-v2
Cfa-Mir-362-P3b
Cpo-Mir-362-P3b
Dno-Mir-362-P3b
Eca-Mir-362-P3b-v1
Eca-Mir-362-P3b-v2
Hsa-Mir-362-P3b
Mml-Mir-362-P3b
Mmr-Mir-362-P3b-v1
Mmr-Mir-362-P3b-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 50287048-50287109 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGGAAUCUUCUGUCCUGGUUCCCCCUCUCUAAUCCUUGCUACCUGUGUGAGAGUGCUUUCUGAAUGCAGUGCACCCAGGCAAGGAUUCUGCAAGGGGGAGUGACAUCUUCGCAUAGGACAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGGAAUCUUCUGUCCUGG-- CUCU-| ACCU AGA GCUUU
UUCCCCCU AAUCCUUGCU GUGUG GU \
GAGGGGGA UUAGGAACGG CACGU CG C
GACAGGAUACGCUUCUACAGU ACGUC^ ACC- GA- UAAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-362-P3b_5p (predicted) |
mirBase accession | None |
Sequence |
0- UAAUCCUUGCUACCUGUGUGAGAGU -25
Get sequence
|
Star sequence |
Pab-Mir-362-P3b_3p* (predicted) |
mirBase accession | None |
Sequence |
38- AGUGCACCCAGGCAAGGAUUCUGC -62
Get sequence
|